All modules for which code is available

• src.domains.extentive_motif_breakage_space
• src.domains.hamming_space
• src.domains.motif_breakage_space
• src.domains.motif_hyphen_space
• src.domains.motif_production_space
• src.domains.motif_space
• src.domains.time_space
• src.domains.trajectory_space
• src.get.alphabet
• src.get.motif_breakage_rate_constants
• src.get.motif_production_rate_constants
• src.get.strand_length_distribution
• src.get.strand_motifs_productions_trajectory
• src.get.strand_motifs_productions_trajectory_ensemble
• src.get.strand_motifs_trajectory
• src.get.strand_motifs_trajectory_ensemble
• src.get.strand_reactor_parameters
• src.infer.collisions
• src.infer.dissociation_constant
• src.infer.effective_ligation_rates_from_parameters
• src.infer.fourmer_breakage_rates
• src.infer.fourmer_mass_correction
• src.infer.fourmer_production_rates
• src.infer.fourmer_trajectory_from_rate_constants
• src.infer.mean_length
• src.infer.motif_breakage_rate_constants_from_strand_reactor_parameters
• src.infer.motif_concentration_trajectory
• src.infer.motif_concentration_vector
• src.infer.motif_production_rate_constants_extension_matrix
• src.infer.motif_production_rate_constants_from_strand_reactor_parameters
• src.infer.motif_production_rates
• src.infer.motif_production_transition_kernel
• src.infer.onset
• src.infer.total_mass
• src.infer.zebraness
• src.obj.motif_breakage_trajectory
• src.obj.motif_breakage_trajectory_ensemble
• src.obj.motif_breakage_vector
• src.obj.motif_concentration_vector
• src.obj.motif_number_vector
• src.obj.motif_production_trajectory
• src.obj.motif_production_trajectory_ensemble
• src.obj.motif_production_vector
• src.obj.motif_trajectory
• src.obj.motif_trajectory_ensemble
• src.obj.motif_vector
• src.obj.times_vector
• src.obj.units
• src.plot.colors
• src.plot.entropy
• src.plot.motif_concentrations
• src.plot.motif_production_rates
• src.plot.motif_trajectory_analysis
• src.plot.zebraness
• src.read.config
• src.read.strand_length_distribution
• src.read.strand_motifs_productions_trajectory
• src.read.strand_motifs_productions_trajectory_ensemble
• src.read.strand_motifs_trajectory
• src.read.strand_motifs_trajectory_ensemble
• src.read.strand_reactor_nucleotides
• src.read.strand_reactor_parameters
• src.utils.logc
• src.utils.manage_strand_reactor_files
• src.utils.save
• src.utils.split_config
• src.utils.transform_vectors_to_fields