src.domains package

Submodules

• src.domains.extentive_motif_breakage_space module
  • makeExtentiveMotifBreakageSpace()
• src.domains.hamming_space module
  • HammingSpace
    • HammingSpace.__init__()
    • HammingSpace.alphabet
    • HammingSpace.wordlength
• src.domains.motif_breakage_space module
  • MotifBreakageSpace
• src.domains.motif_hyphen_space module
  • MotifHyphenSpace
    • MotifHyphenSpace.make()
    • MotifHyphenSpace.motiflength
    • MotifHyphenSpace.alphabet
    • MotifHyphenSpace.number_of_letters
    • MotifHyphenSpace.units
  • make_hyphen_dct()
• src.domains.motif_production_space module
  • make_motif_production_dct()
  • MotifProductionSpace
    • MotifProductionSpace.__init__()
    • MotifProductionSpace.make()
    • MotifProductionSpace.alphabet
    • MotifProductionSpace.number_of_letters
    • MotifProductionSpace.maximum_ligation_window_length
    • MotifProductionSpace.motiflength
• src.domains.motif_space module
  • make_hamming_dct()
  • MotifSpace
    • MotifSpace.__init__()
    • MotifSpace.make()
    • MotifSpace.motiflength
    • MotifSpace.alphabet
    • MotifSpace.number_of_letters
    • MotifSpace.units
• src.domains.time_space module
  • TimeSpace()
  • isinstance_timespace()
  • are_compatible_timespaces()
  • TimeRGSpace
    • TimeRGSpace.__init__()
    • TimeRGSpace.units
  • UnstructuredTimeDomain
    • UnstructuredTimeDomain.__init__()
    • UnstructuredTimeDomain.units
• src.domains.trajectory_space module
  • TrajectorySpace()

Module contents