src.read.strand_motifs_trajectory_ensemble module

strand_motifs_trajectory_ensemble(filepath_lists: list, alphabet: list, motiflength: int = 4, skiprows: int = 2) → MotifTrajectoryEnsemble

reads from the complexes.txt of the RNAReactor simulation output and returns corresponding concentration vectors in motif space.

PARAMETERS:

filepath_listslist

Output files (complexes.txt) of the RNAReactor simulation Can be list of lists of motif_trajectory_sections, then the inner list will be used for creating the motif trajectories, the outer list distinguishes the different motif trajectories.

skiprowint, optional

Skip the first skiprow lines, including comments when reading the file; default : 2

RETURN:

strand_motifs_trajectory_ensemble : MotifTrajectoryEnsemble