src.plot.motif_concentrations module

calculate_concentration_of_a_single_particle(c_ref, number_a_monomers)

compute_words(letters, zeros=(0, 0, 0, 0))

continuations_trajectories(motif_trajectory_ensembles: list, plotting_time_windows: list = None, c_ref: float = 1.0, plotpath: str = './Plots/', plot_parameters: list = [{'alpha': 0.3, 'color': 'b', 'label': 'Strand', 'linestyle': '-'}]) → None

motif_trajectories(motif_trajectory_ensembles: list, alphabet: list[str] = None, plotting_time_windows: list = None, c_ref: float = 1.0, plotpath: str = './Plots/', plot_parameters: list = [{'alpha': 0.3, 'color': 'b', 'label': 'Strand', 'linestyle': '-'}], plotformats: list = ['.pdf'], ylim: list = None, motifs_key: str = 'continuation', concentration_of_a_single_particle: float = None, annotations: dict = {'X': {'text': 'a', 'textcoords': 'offset fontsize', 'verticalalignment': 'top', 'xy': (0, 1), 'xycoords': 'axes fraction', 'xytext': (0.5, -0.5)}, 'XXXX': {'text': 'd', 'textcoords': 'offset fontsize', 'verticalalignment': 'top', 'xy': (0, 1), 'xycoords': 'axes fraction', 'xytext': (0.5, -0.5)}, 'XYX': {'text': 'c', 'textcoords': 'offset fontsize', 'verticalalignment': 'top', 'xy': (0, 1), 'xycoords': 'axes fraction', 'xytext': (0.5, -0.5)}, 'YY': {'text': 'b', 'textcoords': 'offset fontsize', 'verticalalignment': 'top', 'xy': (0, 1), 'xycoords': 'axes fraction', 'xytext': (0.5, -0.5)}}, **kwargs) → None