src.infer.dissociation_constant module

hybridization_bond_category(upper_nucleotide: int, hybridized_nucleotide: int, complements: list) -> (<class 'int'>, <class 'bool'>)

segment_category(upper_nucleotide1: int, hybridized_nucleotide1: int, upper_nucleotide2: int, hybridized_nucleotide2: int, complements: list) -> (<class 'int'>, <class 'bool'>, <class 'int'>, <class 'bool'>)

analyze_segment(ii, jj, kk, ll, complements)

dissociation_constant_from_strand_reactor_parameters(characteristic_ligation_length: int, ligation_parameters: dict, complements: list, hybridization_parameters: dict, standard_concentration: float = 1.0, temperature=1.0) → ndarray

ligation_rate_constant_from_strand_reactor_parameters(hybridization_parameters: dict, ligation_parameters: dict, complements: list, characteristic_ligation_length: int)

template_averaged_dissociation_constant_from_strand_reactor_parameters(characteristic_ligation_length, ligation_parameters, complements, hybridization_parameters, standard_concentration, temperature=1.0)

energy_continuous_block(ii, jj, kk, ll, complements, parameters)

give_shape(number_of_letters)