src.infer.effective_ligation_rates_from_parameters module

effective_ligation_rates_from_parameters(trj_parameters: dict, complements: list = [1, 0, 3, 2], motiflength: int = 4, standard_concentration: float = 1.0) → ndarray

calculate_effective_ligation_rate_for_tetramer_creation(standard_concentration, characteristic_ligation_length, complements=[1, 0, 3, 2], ligation_parameters={'stalling_factor_first': 1.0, 'stalling_factor_second': 1.0}, hybridization_parameters={'dG_3_0Match': 0.0, 'dG_3_1Match_mean': 0.0, 'dG_4_0Match': 0.0, 'dG_4_1Match': 0.0, 'dG_4_2Match_mean': 0.0, 'ddG_3_1Match_alternating': 0.0, 'ddG_4_2Match_alternating': 0.0})

separate_hybridization_and_ligation_parameters(traj_parameters: dict) -> (<class 'dict'>, <class 'dict'>)